Bug #2958
Correct cfitsio library dependency
| Status: | Closed | Start date: | 07/15/2019 | |
|---|---|---|---|---|
| Priority: | Normal | Due date: | ||
| Assigned To: |  Knödlseder Jürgen | % Done: | 100% | |
| Category: | - | |||
| Target version: | 1.6.2 | |||
| Duration: |
Description
It turned out that with the latest conda the install breaks since by default a higher cfitsio version gets installed compared to the version against which gammalib was build.
It turned out that on Mac OS X, the conda build is built against the cfitsio and readline libraries installed in /usr/local/gamma/lib, which explains the dependency problems. On SL6 64, the conda build is built against the cfitsio library installed in /usr/lib64.
Recurrence
No recurrence.
Related issues
History
#1
Updated by Knödlseder Jürgen almost 5 years ago
It is not true that the library is build against the installed cfitsio or readline versions, I looked at the wrong place. The library is well built against the libraries installed in the conda environment.
| readline | 7.0 |
| ncurses | 6.0 |
| cfitsio | 3.430 |
#2
Updated by Knödlseder Jürgen almost 5 years ago
- Status changed from New to In Progress
- % Done changed from 0 to 50
On SL6, Python 3.7 requires at least ncurses 6.1. I therefore dropped the version number of ncurses.
#3
Updated by Knödlseder Jürgen almost 5 years ago
- Status changed from In Progress to Closed
- % Done changed from 50 to 100
After creating an Anaconda release for gammalib, I tested the installation using the most recent Anaconda distribution on my Mac:
$ conda create -n gammalib-test python=3.7
Collecting package metadata (current_repodata.json): done
Solving environment: done
## Package Plan ##
environment location: /Users/jurgen/anaconda3/envs/gammalib-test
added / updated specs:
- python=3.7
The following NEW packages will be INSTALLED:
ca-certificates pkgs/main/osx-64::ca-certificates-2019.5.15-0
certifi pkgs/main/osx-64::certifi-2019.6.16-py37_0
libcxx pkgs/main/osx-64::libcxx-4.0.1-hcfea43d_1
libcxxabi pkgs/main/osx-64::libcxxabi-4.0.1-hcfea43d_1
libedit pkgs/main/osx-64::libedit-3.1.20181209-hb402a30_0
libffi pkgs/main/osx-64::libffi-3.2.1-h475c297_4
ncurses pkgs/main/osx-64::ncurses-6.1-h0a44026_1
openssl pkgs/main/osx-64::openssl-1.1.1c-h1de35cc_1
pip pkgs/main/osx-64::pip-19.1.1-py37_0
python pkgs/main/osx-64::python-3.7.3-h359304d_0
readline pkgs/main/osx-64::readline-7.0-h1de35cc_5
setuptools pkgs/main/osx-64::setuptools-41.0.1-py37_0
sqlite pkgs/main/osx-64::sqlite-3.28.0-ha441bb4_0
tk pkgs/main/osx-64::tk-8.6.8-ha441bb4_0
wheel pkgs/main/osx-64::wheel-0.33.4-py37_0
xz pkgs/main/osx-64::xz-5.2.4-h1de35cc_4
zlib pkgs/main/osx-64::zlib-1.2.11-h1de35cc_3
Proceed ([y]/n)? y
Preparing transaction: done
Verifying transaction: done
Executing transaction: done
#
# To activate this environment, use:
# > conda activate gammalib-test
#
# To deactivate an active environment, use:
# > conda deactivate
#
$ conda activate gammalib-test
$ conda install gammalib
Collecting package metadata (current_repodata.json): done
Solving environment: done
## Package Plan ##
environment location: /Users/jurgen/anaconda3/envs/gammalib-test
added / updated specs:
- gammalib
The following packages will be downloaded:
package | build
---------------------------|-----------------
gammalib-1.6.2 | py37h0e1a375_1 25.7 MB cta-observatory
libgfortran-3.0.1 | h93005f0_2 426 KB
------------------------------------------------------------
Total: 26.1 MB
The following NEW packages will be INSTALLED:
cfitsio conda-forge/osx-64::cfitsio-3.430-h50cca31_1002
curl pkgs/main/osx-64::curl-7.64.1-ha441bb4_0
gammalib cta-observatory/osx-64::gammalib-1.6.2-py37h0e1a375_1
krb5 pkgs/main/osx-64::krb5-1.16.1-hddcf347_7
libcurl pkgs/main/osx-64::libcurl-7.64.1-h051b688_0
libgfortran pkgs/main/osx-64::libgfortran-3.0.1-h93005f0_2
libssh2 pkgs/main/osx-64::libssh2-1.8.2-ha12b0ac_0
Proceed ([y]/n)? y
Downloading and Extracting Packages
gammalib-1.6.2 | 25.7 MB | #################################################################################### | 100%
libgfortran-3.0.1 | 426 KB | #################################################################################### | 100%
Preparing transaction: done
Verifying transaction: done
Executing transaction: done
$ createfits
$ optimize
Function value .....: 0.498902
Parameter value ....: 0.50055
Things seem to work as expected. Close the issue now.
#4
Updated by Knödlseder Jürgen about 3 years ago
- Related to Bug #3619: conda install does not install latest version added